GSM4627260: RPMI_51498; Klebsiella variicola; RNA-Seq - SRA

SRX8583279: GSM4627260: RPMI_51498; Klebsiella variicola; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 12.5M spots, 2.5G bases, 1.1Gb downloads

Submitted by: NCBI (GEO)

Study: Bioplatforms Australia: Antibiotic Resistant Sepsis Pathogens Framework Initiative - Klebsiella variicola 03-311-0071

PRJNA640635 • SRP268016 • All experiments • All runs

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The Antibiotic Resistant Sepsis Pathogens Framework Initiative aims to develop a framework dataset of 5 sepsis pathogens (5 strains each) using an integrated application of genomic, transcriptomic, metabolomic and proteomic technologies. The pathogens included in this initiative are: Escherichia coli, Klebsiella pneumoniae complex, Staphylococcus aureus, Streptococcus pyogenes, and Streptococcus pneumoniae. This submission pertains to strain 03-311-0071. Overall design: 12 samples, 2 conditions, 6 biological replicates per condition. contributor: Bioplatforms Australia Antibiotic Resistant Sepsis Pathogens Framework Initiative

Sample: RPMI_51498

SAMN15326296 • SRS6874896 • All experiments • All runs

Organism: Klebsiella variicola

Library:

Instrument: Illumina HiSeq 2500

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: PAIRED

Construction protocol: Bacterial rRNA depletion with Illumina Ribo-Zero rRNA Removal Kit (Bacteria) followed by strand RNAseq sample preparation with Illumina TruSeq Stranded mRNA Library Prep Kit

Experiment attributes:

GEO Accession: GSM4627260

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 12.5M spots, 2.5G bases, 1.1Gb

Run	# of Spots	# of Bases	Size	Published
SRR12054860	12,458,553	2.5G	1.1Gb	2021-07-01

ID:: 11158698

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